Chickens were infected orally at 4. 5 weeks of age with 2. 5 �� 103 sporulated oocysts of Eimeria tenella. Fresh E. tenella oocysts were harvested 7 days post infection from the caeca following protocols published previously. Sporulation of oocysts was carried Inhibitors,Modulators,Libraries out at 28 C for 72 120 hours using a low pressure aquarium pump to aerate the suspension. Sporulated oocysts were then treated with 2. 8 M NaCl and 2% sodium hypochlorite and stored in 2% potassium dichromate at 4 C until required. Unsporulated oocysts were also treated with Milton solution and stored at ?80 C. Merozoites and gametocytes were isolated from infected chicken caecae following tech niques published previously. Aliquots of parasites were either frozen at ?80 C as pellets or were stored in TRIzolW reagent at ?80 C for further use in RNA purification.

RNA purification, cDNA synthesis and cDNA standardisation To isolate total RNA, purified merozoites and gametocytes Inhibitors,Modulators,Libraries were resuspended in 1 ml TRIzolW Reagent and homogenized by pipetting. Unsporulated oocysts and sporulated oocysts were resuspended in 1 ml TRIzolW Reagent and one volume of glass beads were added to the sam ple, which were then vortexed for 1 min intervals until disruption of oocyst was confirmed by bright field mi croscopy. All TRIzolW treated samples were left at AV-951 room temperature for 10 min and total RNA isolated by chloroform extraction and isopropanol precipitation. RNA was quantified using a NanoDrop ND 1000 Spectrophotometer and cDNA was synthesized using SuperScript III Reverse Transcriptase according to manufacturers instructions.

Parasite cDNA samples were standardized by relative quantification of an E. tenella B actin PCR product. B actin forward primer E0043 and reverse primer E0044 were used to generate the 1020 bp B actin cDNA PCR product. Each PCR reaction contained 50 ng of parasite stage specific cDNA, 0. 2 uM forward Inhibitors,Modulators,Libraries primer, 0. 2 uM reverse primer, 1 �� AccuPrime reaction mix, and AccuPrime Pfx DNA polymerase. The PCR reaction was carried out as follows, initial denaturation 95 C for 3 min, 95 C for 30 s, 61 C for 1 min, 68 C for 1. 5 min, for 25 cycles with a final extension at 68 C for 10 min. All products were electrophoresed on a 1% agarose gel and visualized using Gel Red. The net intensity of each band was determined using the Kodak EDAS 290 Electrophoresis Documentation and Analysis System and serial dilutions performed until rela tive intensity of PCR products were equal.

In addition, three control genes were amplified to de termine the purity Inhibitors,Modulators,Libraries of parasite lifecycle stages. The GAM56 gene was used as a gametocyte specific gene. GAM56 forward primer E0030 and reverse primer E0031 were designed to amplify a 906 bp gametocyte cDNA product at an annealing temperature of 61 C. The EtTFP250 gene, a homolog of an E. maxima gene encoding a microneme protein, was used as an asexual stage control.